API Reference

scAutoQC

`calculate_qc`(adata[, flags, extra_flags, ...])	Calculate quality control (QC) metrics for an AnnData object.
`cellwise_qc`(adata[, metrics, cell_qc_key, ...])	Filter cells in an AnnData object based on quality control metrics.
`generate_qc_clusters`(ad, metrics[, aux_ad, ...])	Generate quality control (QC) clusters for an AnnData object.
`clusterwise_qc`(ad[, threshold, clus_key, ...])	Find good quality control (QC) clusters in an AnnData object.
`multi_resolution_cluster_qc`(ad, metrics[, ...])	Run `generate_qc_clusters()` and `clusterwise_qc()` for a number of potential resolutions.

fit_gaussian(x[, n_components, threshold, ...])

Fit a Gaussian mixture model to a 1D numpy array.